Basin-wide variation in tree hydraulic safety margins predicts the carbon balance of Amazon forests.

Tropical forests face increasing climate risk1,2, yet our ability to predict their response to climate change is limited by poor understanding of their resistance to water stress. Although xylem embolism resistance thresholds (for example, [Formula: see text]50) and hydraulic safety margins (for example, HSM50) are important predictors of drought-induced mortality risk3-5, little is known about how these vary across Earth's largest tropical forest. Here, we present a pan-Amazon, fully standardized hydraulic traits dataset and use it to assess regional variation in drought sensitivity and hydraulic trait ability to predict species distributions and long-term forest biomass accumulation. Parameters [Formula: see text]50 and HSM50 vary markedly across the Amazon and are related to average long-term rainfall characteristics. Both [Formula: see text]50 and HSM50 influence the biogeographical distribution of Amazon tree species. However, HSM50 was the only significant predictor of observed decadal-scale changes in forest biomass. Old-growth forests with wide HSM50 are gaining more biomass than are low HSM50 forests. We propose that this may be associated with a growth-mortality trade-off whereby trees in forests consisting of fast-growing species take greater hydraulic risks and face greater mortality risk. Moreover, in regions of more pronounced climatic change, we find evidence that forests are losing biomass, suggesting that species in these regions may be operating beyond their hydraulic limits. Continued climate change is likely to further reduce HSM50 in the Amazon6,7, with strong implications for the Amazon carbon sink.

Selective sorption and desorption of DOM in Podzol horizons - DOC and aluminium contents of leachates from a column experiment.

Complexation of dissolved organic matter (DOM) with cations and minerals contributes to the stabilization of carbon in soils, and can enable the transport of metals in the environment. Hence, a proper understanding of mechanisms that control DOM binding properties in the soil is important for major environmental challenges, such as climate change and stream pollution. However, the role of DOM source in those mechanisms remains understudied. Here, we consider poorly drained tropical Podzols as a model environment to isolate effects of aluminium and DOM on sorption and desorption processes in podzolisation. We collected E- and Bh-horizons from a Brazilian coastal Podzol under tropical rainforest to conduct a column experiment, and percolated the columns with DOM collected from a stream (Stream), peat water (Peat), litter (Litter) and charred litter (Char). To quantify sorption and desorption from the columns, leachates were analysed for DOC content, aluminium content, pH, and the amount of fulvic acid relative to humic acid. The results showed large differences in DOC retention between DOM-types, which were consistent over all columns. Retention of DOC in the column varied between 25 % and 92 % for DOM-type Stream, between 33 % and 63 % for DOM-type Peat, between 22 % and 47 % for DOM-type Litter, and between 8 % and 49 % for DOM-type Char. Similarly, desorption from columns with B-horizon material highly differed between DOM-types. Percolation with DOM-types Stream and Peat caused a release of native DOC from B columns that was higher than in those percolated with water only. On the other hand, percolation of B columns with DOM-types Litter and Char caused a net DOC retention. These differences reflect that certain DOM-types hindered desorption, while other DOM-types caused active desorption. The large differences in sorption/desorption between DOM-types implies that changes in environmental conditions may highly influence the fate of soil carbon in Podzols.

Linking land-use and land-cover transitions to their ecological impact in the Amazon.

Human activities pose a major threat to tropical forest biodiversity and ecosystem services. Although the impacts of deforestation are well studied, multiple land-use and land-cover transitions (LULCTs) occur in tropical landscapes, and we do not know how LULCTs differ in their rates or impacts on key ecosystem components. Here, we quantified the impacts of 18 LULCTs on three ecosystem components (biodiversity, carbon, and soil), based on 18 variables collected from 310 sites in the Brazilian Amazon. Across all LULCTs, biodiversity was the most affected ecosystem component, followed by carbon stocks, but the magnitude of change differed widely among LULCTs and individual variables. Forest clearance for pasture was the most prevalent and high-impact transition, but we also identified other LULCTs with high impact but lower prevalence (e.g., forest to agriculture). Our study demonstrates the importance of considering multiple ecosystem components and LULCTs to understand the consequences of human activities in tropical landscapes.

Stemflow generation as influenced by sugarcane canopy development.

Rainfall is generally partitioned into throughfall, stemflow, and interception in ecosystems. Stemflow variability can affect the hydrology, ecology, and soil chemistry patterns. However, the influence of canopy structure and rainfall characteristics on stemflow production in sugarcane plantations which are important for renewable energy production remain poorly understood. By using funnels attached to the sugarcane stems, the present study determined the stemflow amount during the period of sugarcane growth and its relationship with plant development. Approximately, 14% of gross rainfall reached the soil as stemflow, and the funneling ratios was 60. In general, it was observed a positive relationship between stemflow rates with both leaf area index and plant height. This was attributed to an increasing number of acute branching angles of the sugarcane leaves as well as high stem tillering and density. However, at the end of growth cycle, stemflow rate was lower than in previous periods which can be attributed to changes in sugarcane canopy such as stems inclination and lodging, reducing the effectiveness of water conveyance along the stem. Our study showed the need to include stemflow to better understand the hydrology of sugarcane plantations.

Asymbiotic nitrogen fixation in the phyllosphere of the Amazon forest: Changing nitrogen cycle paradigms.

Biological nitrogen fixation is a key process for the maintenance of natural ecosystems productivity. In tropical forests, the contribution of asymbiotic nitrogen fixation (ANF) to the nitrogen (N) input has been underestimated, even though few studies have shown that ANF may be as important as symbiotic nitrogen fixation in such environments. The inputs and abiotic modulators of ANF in the Amazon forest are not completely understood. Here, we determined ANF rates and estimated the N inputs from ANF in the phyllosphere, litter and rhizospheric soil of nine tree species in the Amazon forest over time, including an extreme drought period induced by the El Niño-Southern Oscillation. Our data showed that ANF rates in the phyllosphere were 2.8- and 17.6-fold higher than in the litter and rhizospheric soil, respectively, and was highly dependent on tree taxon. Sampling time was the major factor modulating ANF in all forest compartments. At the driest period, ANF rates were approximately 1.8-fold and 13.1-fold higher than at periods with higher rainfall, before and after the extreme drought period, respectively. Tree species was a key modulator of ANF in the phyllosphere, as well as N and Vanadium concentrations. Carbon, molybdenum and vanadium concentrations were significant modulators of ANF in the litter. Based on ANF rates at the three sampling times, we estimated that the N input in the Amazon forest through ANF in the phyllosphere, litter and rhizospheric soil, was between 0.459 and 0.714 kg N ha-1 yr-1. Our results highlight the importance of ANF in the phyllosphere for the N input in the Amazon forest, and suggest that changes in the patterns of ANF driven by large scale climatic events may impact total N inputs and likely alter forest productivity.

Rainforest-to-pasture conversion stimulates soil methanogenesis across the Brazilian Amazon.

The Amazon rainforest is a biodiversity hotspot and large terrestrial carbon sink threatened by agricultural conversion. Rainforest-to-pasture conversion stimulates the release of methane, a potent greenhouse gas. The biotic methane cycle is driven by microorganisms; therefore, this study focused on active methane-cycling microorganisms and their functions across land-use types. We collected intact soil cores from three land use types (primary rainforest, pasture, and secondary rainforest) of two geographically distinct areas of the Brazilian Amazon (Santarém, Pará and Ariquemes, Rondônia) and performed DNA stable-isotope probing coupled with metagenomics to identify the active methanotrophs and methanogens. At both locations, we observed a significant change in the composition of the isotope-labeled methane-cycling microbial community across land use types, specifically an increase in the abundance and diversity of active methanogens in pastures. We conclude that a significant increase in the abundance and activity of methanogens in pasture soils could drive increased soil methane emissions. Furthermore, we found that secondary rainforests had decreased methanogenic activity similar to primary rainforests, and thus a potential to recover as methane sinks, making it conceivable for forest restoration to offset greenhouse gas emissions in the tropics. These findings are critical for informing land management practices and global tropical rainforest conservation.

What do stable isotopes tell us about the trophic ecology of Thamnodynastes hypoconia (Serpentes: Dipsadidae) in southern Brazil?

Snakes are a useful model for ecological studies because they are gape-limited predators that may undergo ontogenetic changes in diet. We analyzed carbon and nitrogen stable isotope ratios to estimate percent contributions of different prey to snake biomass, trophic positions and isotopic niche width of juveniles and adults of the snake Thamnodynastes hypoconia. We also estimated the isotopic niche overlap between the two age categories. During eight intervals over a two-year period, we collected samples of whole blood and scales at a site in southern Brazil. Isotopic ratios of carbon and nitrogen did not differ between juveniles and adults for either tissue type, nor did mean trophic positions of juveniles and adults differ. The percent contribution of prey categories to snake biomass differed to a limited extent between the two years, with Hylidae being the most important anuran group assimilated during the first year and Leptodactylidae during the second year, for both ages. The isotopic niche occupied by adult snakes was slightly larger than that of juveniles when the analysis was based on data from whole blood samples, as expected because snakes are gape-limited. We found a reverse pattern when the analysis was based on scales, which may indicate that adult snakes have a smaller niche over the long term as they become selective foragers in certain prey. Isotopic overlap between juveniles and adults occurred during the two years, but it was bigger during the second year. We infer that, despite differences in gape size, juvenile and adult snakes in the study area exploit similar prey, with the degree of trophic similarity varying interannually.

Does food partitioning vary in leaf-eating crabs in response to source quality?

Mangroves have a relevant ecosystem function due to their efficiency in blue carbon sequestration. Autotrophic carbon conservation in mangroves remains controversial. In this sense, autotrophic nutrient assimilation by crabs can highlight their ecosystem function. This study aims to identify the relationship between quality sources and food partitioning in two leaf-eating crabs, Ucides cordatus and Goniopsis cruentata. Quantification of the litterfall biomass, analysis of the soil, the C/N ratio and stable isotopes (δ13C and δ15N) were used to evaluate food sources and crab tissues in two mangrove forests. The litterfall and soil C contents and C/N ratios of the Pacoti River (PR) were higher than those of the Jaguaribe River. The higher C/N ratios of the litterfall of the PR led to higher nitrogen ingestion from complementary food sources (soil and omnivorous invertebrates). The nutritional requirements and food partitioning behavior of both species emphasize the ecosystem functions of leaf-eating crabs concerning the assimilation and conservation of autotrophic carbon and nitrogen in mangroves.

Age-dependent leaf physiology and consequences for crown-scale carbon uptake during the dry season in an Amazon evergreen forest.

Satellite and tower-based metrics of forest-scale photosynthesis generally increase with dry season progression across central Amazônia, but the underlying mechanisms lack consensus. We conducted demographic surveys of leaf age composition, and measured the age dependence of leaf physiology in broadleaf canopy trees of abundant species at a central eastern Amazon site. Using a novel leaf-to-branch scaling approach, we used these data to independently test the much-debated hypothesis - arising from satellite and tower-based observations - that leaf phenology could explain the forest-scale pattern of dry season photosynthesis. Stomatal conductance and biochemical parameters of photosynthesis were higher for recently mature leaves than for old leaves. Most branches had multiple leaf age categories simultaneously present, and the number of recently mature leaves increased as the dry season progressed because old leaves were exchanged for new leaves. These findings provide the first direct field evidence that branch-scale photosynthetic capacity increases during the dry season, with a magnitude consistent with increases in ecosystem-scale photosynthetic capacity derived from flux towers. Interactions between leaf age-dependent physiology and shifting leaf age-demographic composition are sufficient to explain the dry season photosynthetic capacity pattern at this site, and should be considered in vegetation models of tropical evergreen forests.

Relative effects of nutrient emission from intensive cage aquaculture on the semiarid reservoir water quality.

The effects of cage aquaculture on freshwater ecosystems are determined by multiple farming and environmental variables, and thus, the assessment of a wide range of abiotic and biotic variables enables better understanding of the impacts generated by this nutrient source. This study was carried out at Castanhão reservoir located in the State of Ceará, which is the largest Brazilian producer of Nile tilapia in cage systems, wherein about 8000 reservoirs provide a vast area to expand not only this important socio-economic but also pollution-prone activity. Nutrient mass budget, water quality monitoring, hydrodynamic characterization, and elemental/stable isotopic composition of end-member products were measured in cage aquaculture and other reservoir areas in order to determine the relative effects on reservoir conditions. Nutrient budgets showed that 34% of the artificial feed was lost to the water column but water quality monitoring and isotopic composition analysis suggested that the cages were not extensively impacting the water quality probably because of the physiographic and hydrodynamic features of the cage site.

A large-scale field assessment of carbon stocks in human-modified tropical forests.

Tropical rainforests store enormous amounts of carbon, the protection of which represents a vital component of efforts to mitigate global climate change. Currently, tropical forest conservation, science, policies, and climate mitigation actions focus predominantly on reducing carbon emissions from deforestation alone. However, every year vast areas of the humid tropics are disturbed by selective logging, understory fires, and habitat fragmentation. There is an urgent need to understand the effect of such disturbances on carbon stocks, and how stocks in disturbed forests compare to those found in undisturbed primary forests as well as in regenerating secondary forests. Here, we present the results of the largest field study to date on the impacts of human disturbances on above and belowground carbon stocks in tropical forests. Live vegetation, the largest carbon pool, was extremely sensitive to disturbance: forests that experienced both selective logging and understory fires stored, on average, 40% less aboveground carbon than undisturbed forests and were structurally similar to secondary forests. Edge effects also played an important role in explaining variability in aboveground carbon stocks of disturbed forests. Results indicate a potential rapid recovery of the dead wood and litter carbon pools, while soil stocks (0-30 cm) appeared to be resistant to the effects of logging and fire. Carbon loss and subsequent emissions due to human disturbances remain largely unaccounted for in greenhouse gas inventories, but by comparing our estimates of depleted carbon stocks in disturbed forests with Brazilian government assessments of the total forest area annually disturbed in the Amazon, we show that these emissions could represent up to 40% of the carbon loss from deforestation in the region. We conclude that conservation programs aiming to ensure the long-term permanence of forest carbon stocks, such as REDD+, will remain limited in their success unless they effectively avoid degradation as well as deforestation.

A social and ecological assessment of tropical land uses at multiple scales: the Sustainable Amazon Network.

Science has a critical role to play in guiding more sustainable development trajectories. Here, we present the Sustainable Amazon Network (Rede Amazônia Sustentável, RAS): a multidisciplinary research initiative involving more than 30 partner organizations working to assess both social and ecological dimensions of land-use sustainability in eastern Brazilian Amazonia. The research approach adopted by RAS offers three advantages for addressing land-use sustainability problems: (i) the collection of synchronized and co-located ecological and socioeconomic data across broad gradients of past and present human use; (ii) a nested sampling design to aid comparison of ecological and socioeconomic conditions associated with different land uses across local, landscape and regional scales; and (iii) a strong engagement with a wide variety of actors and non-research institutions. Here, we elaborate on these key features, and identify the ways in which RAS can help in highlighting those problems in most urgent need of attention, and in guiding improvements in land-use sustainability in Amazonia and elsewhere in the tropics. We also discuss some of the practical lessons, limitations and realities faced during the development of the RAS initiative so far.

Assessment of ametryn contamination in river water, river sediment, and mollusk bivalves in São Paulo state, Brazil.

São Paulo state, Brazil, is one of the main areas of sugar cane agriculture in the world. Herbicides, in particular, ametryn, are extensively used in this extensive area, which implies that this herbicide is present in the environment and can contaminate the surface water by running off. Thereby, residues of ametryn were analyzed in samples of river water an river sediment and in freshwater bivalves obtained from the rivers Sapucaí, Pardo and Mogi-Guaçu in São Paulo State, Brazil. Samples were taken in the winter of 2003 and 2004 in two locations in each river. The specimens of freshwater bivalves collected and analyzed were Corbicula fluminea, an exotic species, and Diplodon fontaineanus, a native species. Additionally, the evaluation of the ability of bioconcentration and depuration of ametryn by the freshwater bivalve Corbicula fluminea was also performed. Ametryn concentrations in the samples were measured by liquid chromatography coupled to mass spectrometry. Residues of ametryn in water (50 ng/L) and in freshwater bivalves (2-7 ng/g) were found in the Mogi-Guaçu River in 2004, and residues in river sediments were found in all rivers in 2003 and 2004 (0.5-2 ng/g). The observation of the aquatic environment through the analysis of these matrixes, water, sediment, and bivalves, revealed the importance of the river sediment in the accumulation of the herbicide ametryn, which can contaminate the biota.

Mercury distribution in medium-size rivers and reservoirs of the Sao Paulo state (southeast Brazil).

The aim of this work was to investigate mercury (Hg) levels in six meso-scale watersheds (Upper Paranapanema, Aguapeí, Peixe, São José dos Dourados, Mogi-Guaçu, and Piracicaba) of the São Paulo state to contribute to a more comprehensive understanding of Hg contamination in Brazil. Water, sediment, bivalves, and fish samples were collected during 2001 at 11 sites. Fish were also collected in the Jurumirim and Salto Grande Reservoirs which are 39 and 52 yr old since impoundment, respectively. Results showed that Hg concentrations were low in almost all samples, except fish from Jurumirim Reservoir (total mercury [T-Hg] = 1.14 +/- 0.55 mg kg(-1) wet wt.). In spite of industrialization and high population, the results showed that there was no important source of Hg contamination in the investigated areas. The higher concentrations found in fish from Jurumirim seem to be the result of processes that favor Hg mobilization and methylation as a consequence of the impoundment of the reservoir area. The same levels were not observed in the Salto Grande Reservoir, probably because these are no longer significant due to the long time since the impoundment. To understand the dynamics of methylmercury (MeHg) production and its accumulation in fish, further studies are needed in the Jurumirim Reservoir. The results show that even at low T-Hg concentrations in sediment and water, concentrations in fish can reach values that pose concerns for consumption. This emphasizes the importance of designing an optimized biomonitoring program that can provide warning of biogeochemical conditions that promote formation of MeHg.

Forest structure and carbon dynamics in Amazonian tropical rain forests.

Living trees constitute one of the major stocks of carbon in tropical forests. A better understanding of variations in the dynamics and structure of tropical forests is necessary for predicting the potential for these ecosystems to lose or store carbon, and for understanding how they recover from disturbance. Amazonian tropical forests occur over a vast area that encompasses differences in topography, climate, and geologic substrate. We observed large differences in forest structure, biomass, and tree growth rates in permanent plots situated in the eastern (near Santarém, Pará), central (near Manaus, Amazonas) and southwestern (near Rio Branco, Acre) Amazon, which differed in dry season length, as well as other factors. Forests at the two sites experiencing longer dry seasons, near Rio Branco and Santarém, had lower stem frequencies (460 and 466 ha(-1) respectively), less biodiversity (Shannon-Wiener diversity index), and smaller aboveground C stocks (140.6 and 122.1 Mg C ha(-1)) than the Manaus site (626 trees ha(-1), 180.1 Mg C ha(-1)), which had less seasonal variation in rainfall. The forests experiencing longer dry seasons also stored a greater proportion of the total biomass in trees with >50 cm diameter (41-45 vs 30% in Manaus). Rates of annual addition of C to living trees calculated from monthly dendrometer band measurements were 1.9 (Manaus), 2.8 (Santarém), and 2.6 (Rio Branco) Mg C ha(-1) year(-1). At all sites, trees in the 10-30 cm diameter class accounted for the highest proportion of annual growth (38, 55 and 56% in Manaus, Rio Branco and Santarém, respectively). Growth showed marked seasonality, with largest stem diameter increment in the wet season and smallest in the dry season, though this may be confounded by seasonal variation in wood water content. Year-to-year variations in C allocated to stem growth ranged from nearly zero in Rio Branco, to 0.8 Mg C ha(-1) year(-1) in Manaus (40% of annual mean) and 0.9 Mg C ha(-1) year(-1) (33% of annual mean) in Santarém, though this variability showed no significant relation with precipitation among years. Initial estimates of the C balance of live wood including recruitment and mortality as well as growth suggests that live wood biomass is at near steady-state in Manaus, but accumulating at about 1.5 Mg C ha(-1) at the other two sites. The causes of C imbalance in living wood pools in Santarém and Rio Branco sites are unknown, but may be related to previous disturbance at these sites. Based on size distribution and growth rate differences in the three sites, we predict that trees in the Manaus forest have greater mean age (approximately 240 years) than those of the other two forests (approximately 140 years).